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Now Your Food Has Fake DNA in It

Mother Jones

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Like many novel technologies in this age of TED Talks and Silicon Valley triumphalism, synthetic biology—synbio for short—floats on a sea of hype. One of its founding scientists, Boston University biomedical engineer James Collins, has called it “genetic engineering on steroids.” Whereas garden-variety genetic engineers busy themselves moving genes from one organism into another—to create tomatoes that don’t bruise easily, for example—synthetic biologists generate new DNA sequences the way programmers write code, creating new life-forms.

It may sound like science fiction, but synbio companies have already performed modest miracles. The California-based firm Amyris, for example, has harnessed the technology to make a malaria drug that now comes from a tropical plant. In order to do this, company scientists leveraged the well-known transformative powers of yeast, which humans have used for millennia to turn, say, the sugar in grape juice into alcohol: They figured out how the wormwood tree generates artemisinic acid—the compound that makes up the globe’s last consistently effective anti-malarial treatment—and programmed a yeast strain to do the same thing.

And there could be more innovations on the horizon. In 2011, Craig Venter, the scientist/entrepreneur who spearheaded the mapping of the human genome, vowed to synthesize an algae that would use sunlight to unlock the energy in carbon dioxide. If successful, this attempt to replicate photosynthesis could transform CO2 from climate-heating scourge into a limitless source of energy. Synthetic biologists also aim to conjure up self-growing buildings, streetlight-replacing glowing trees, and medicines tailored to your body’s needs. No wonder the market for synbio is expected to reach $13.4 billion by 2019.

So how soon can you expect glowing trees to light up your block? Well, no one knows. That’s because thus far it has been much easier to create novel life-forms than to control how they function. Venter, for example, hasn’t yet figured out how to cheaply grow enough of his synbio algae to make it competitive with fossil fuels. And malaria is rapidly developing resistance to artemisin drugs, which could eventually render the synbio replicant as useless as the real deal.

But while synbio likely won’t sort out our climate and health woes anytime soon, it just might transform our…ice cream. By creating yeasts that produce high-end flavorings, a Swiss company called Evolva has created synbio vanillin, the main flavor compound in the vanilla bean—and it insists its product tastes much better than the petroleum-derived synthetic vanillin that now comprises virtually all of the vanilla market. Evolva is also preparing to release a synbio version of resveratrol, a compound with antioxidant properties naturally found in grapes and cocoa beans. Next up: a better-tasting version of stevia, a natural, low-calorie sweetener that the soda industry hopes can replace synthetic chemicals in diet sodas. After that, Evolva hopes to make a dizzying variety of lab-grown analogues, including musk, truffle flavoring, and even breast milk.

What could possibly go wrong with vanilla flavoring brewed by DNA-manipulated yeast? Well, like genetic engineering, synbio falls into a regulatory void that often allows products to go from lab to grocery store with little or no oversight. Evolva’s vanillin and resveratrol will likely sail through the Food and Drug Administration’s approval process—and end up in your food without any special labeling—because they are versions of already-existing compounds and thus have “generally recognized as safe” status. The Environmental Protection Agency—which is supposed to evaluate the environmental implications of new products—requires companies to file a report on novel microbes but doesn’t always mandate testing.

And what happens to farmers when their jobs are taken over by designer yeasts? Jim Thomas, the research program manager for the Canada-based technology watchdog ETC Group, points out that synbio companies are so far targeting stuff grown in the Global South, which could have devastating economic consequences for the poor farmers who produce the natural versions. In addition to vanilla (grown in Madagascar, Indonesia, and Mexico) and stevia (China, Paraguay, and Kenya), Evolva’s projected roster of products includes saffron (Iran), turmeric (India), and ginseng (China).

Evolva CEO Neil Goldsmith says that Thomas raises a “legitimate question” but doesn’t think farmers will ultimately be harmed. He argues that synthetic vanillin has existed for decades without taking business away from natural vanilla producers. But that could be because consumers are willing to pay more for the real version. If Evolva is allowed to market its vanillin as a “natural” flavoring rather than a synthetic one, then it could compete directly with vanilla farmers—and it looks like Evolva is aiming to do just that: A recent press release called the product “natural vanillin for global food and flavor markets.”

Indeed, Goldsmith claims that his process is “as natural as bread.” Yeasts used in commercial bakeries have been carefully selected and cultivated. Now, you may consider creating new DNA to be an entirely different matter, but whether you find it creepy or cool ultimately doesn’t matter: Because synbio foods won’t have to be labeled as such, you’ll likely soon be eating them—without even knowing it.

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Now Your Food Has Fake DNA in It

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This Is the Lamest Defense of GMO Foods Ever

Mother Jones

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Over on our environment blog, Chris Mooney posts an excerpt from an interview in which Neil deGrasse Tyson defends GMO foods:

“Practically every food you buy in a store for consumption by humans is genetically modified food,” asserts Tyson. “There are no wild, seedless watermelons. There’s no wild cows…You list all the fruit, and all the vegetables, and ask yourself, is there a wild counterpart to this? If there is, it’s not as large, it’s not as sweet, it’s not as juicy, and it has way more seeds in it. We have systematically genetically modified all the foods, the vegetables and animals that we have eaten ever since we cultivated them. It’s called artificial selection.”

This is a very common defense of GMO foods, but I’ve always found it to be the weakest, least compelling argument possible. It’s so weak, in fact, that I always wonder if people who make it are even operating in good faith.

It’s true that we’ve been breeding new and better strains of plants and animals forever. But this isn’t a defense of GMO. On the contrary, it’s precisely the point that GMO critics make. We have about 10,000 years of evidence that traditional breeding methods are basically safe. That’s why anyone can do it and it remains virtually unregulated. We have no such guarantee with artificial methods of recombinant DNA. Both the technique itself and its possible risks are completely different, and Tyson surely knows this. If he truly believed what he said, he’d be in favor of removing all regulation of GMO foods and allowing anyone to experiment with it. Why not, after all, if it’s really as safe as Gregor Mendel cross-breeding pea plants?

As it happens, I mostly agree with Tyson’s main point. Although I have issues surrounding the way GMO seeds are distributed and legally protected, the question of whether GMO foods are safe for human consumption seems reasonably well settled. The technology is new enough, and our testing is still short-term enough, that I would continue to err on the side of caution when it comes to approving GMO foods. Still, GMO breeds created under our current regulatory regime are basically safe to eat, and I think that lefty critics of GMO foods should stop cherry picking the evidence to scare people into thinking otherwise.

(Please send all hate mail to Tom Philpott. He can select just the juiciest ones to send along to me.)

But even with that said, we shouldn’t pretend that millennia of creating enhanced and hybrid breeds tells us anything very useful about the safety of cutting-edge laboratory DNA splicing techniques. It really doesn’t.

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This Is the Lamest Defense of GMO Foods Ever

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Canada sued over approval of “toxic” GMO salmon

Canada sued over approval of “toxic” GMO salmon

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Canadian officials ventured into uncharted legal and ecological waters when they approved the cultivation and export of genetically engineered salmon eggs last year. And now environmental groups have sued the government, claiming the approval illegally disregarded the potential for the transgenic fish to become an invasive species.

Quick background: AquaBounty Technologies Inc. has developed Atlantic salmon that grow more quickly than their natural cousins, thanks to the presence of DNA from Chinook salmon and from an eel-like fish called the ocean pout. The company wants to cultivate eggs for this AquAdvantage salmon on Canada’s Prince Edward Island, hatch the eggs and grow the salmon in Panama, then export the meat to the U.S. Approval from the U.S. government is still pending.

Some environmentalists worry that the GMO fish will escape, breed, and outcompete wild species. Under Canadian law, an invasive species can be defined as “toxic” in the environment. Three Canadian nonprofits are claiming that definition of “toxic” could apply to the AquAdvantage salmon and their eggs. Here’s the crux of their legal argument, as described by Global News:

“Our concern is basically, we don’t think they’ve done the due diligence to assess the toxicity of the eggs,” said Susanna Fuller, marine conservation coordinator with the [Ecology Action Centre].

“There is no evidence that the ministers, as part of their Section 108 Toxicity Assessment, considered any data from a test conducted to determine AquAdvantage salmon’s pathogenicity, toxicity or invasiveness as required under paragraph 5(a) of Schedule 5 of the Regulations,” reads the notice of application.

Fuller is also concerned about the lack of public consultation.

Environmentalists in the U.S., where the federal government could approve the sale of the GMO salmon this year, have been quick to voice their support for the legal challenge up north. “This case is an important step in preserving native salmon populations and the environment from an unwanted, untested, novel threat,” said Andrew Kimbrell, executive director for Center for Food Safety. “The short-sighted and unlawful approval by Canadian officials must be addressed.”


Source
Halifax environmental group files lawsuit against federal government, Global News
Groups Sue Canadian Government Over GE Salmon, Center for Food Safety

John Upton is a science fan and green news boffin who tweets, posts articles to Facebook, and blogs about ecology. He welcomes reader questions, tips, and incoherent rants: johnupton@gmail.com.

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Developing a Fax Machine to Copy Life on Mars

DNA sequencing and DNA synthesis are becoming faster and cheaper, and J. Craig Venter wants to use the technology to bring Martian life to Earth. Read this article:  Developing a Fax Machine to Copy Life on Mars ; ;Related ArticlesThe Future of StormsDot Earth Blog: Room for Agreement on Next Steps for Nuclear Power?In a Bean, a Boon to Biotech ;

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Developing a Fax Machine to Copy Life on Mars

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Quebec oil-train tragedy triggered oil spill that threatens water supplies

Quebec oil-train tragedy triggered oil spill that threatens water supplies

The deadly oil-train explosion in Lac-Mégantic, Quebec, on Saturday also sparked an environmental disaster. An oil sheen has stretched more than 60 miles down a river that’s used as a source of drinking water.

By Tuesday morning, 13 people had been confirmed dead and some 37 were still missing after runaway train cars loaded with fracked crude from North Dakota derailed in the town and ignited. Lac-Mégantic’s fire chief said the fire is now under control, but a small area of town is still off limits for safety reasons. Emergency crews continue to search for bodies of the missing. Officials are urging relatives to provide them with DNA, such as on toothbrushes, to help them identify the dead, and are warning that some of the bodies may never be identified.

Meanwhile, water and environment officials are facing up to a crisis of their own. An estimated 26,000 gallons of oil that spilled from the rail cars flowed into the Chaudière River. Residents downstream are being asked to conserve water as municipalities switch to backup sources. From CBC News:

Quebec Environment Minister Yves-François Blanchet told CBC’s Quebec AM that he flew over the Chaudière River Sunday to see the extent of the damage caused by the oil spilled from the derailed tankers.

“What we have is a small, very fine, very thin layer of oil which, however, covers almost entirely the river for something like 100 kilometres from Lac-Mégantic to St-Georges-de-Beauce,” he said.

“This is contained at St-Georges-de-Beauce for the time being, most of it, or almost entirely, and we are very confident we will be in a position to be able to pump most of it out of the river. However, there will be some impact.”

From the BBC:

A spokesman for Quebec’s environmental ministry says floating barriers and other tools are being used to block the oil from heading downstream.

But the pollution has already reached the nearby town of Saint-Georges, prompting fears oil could flow into the St Lawrence River.

Air quality in the town is also a concern. Officials say the air is safe, but an odor may remain.

John Upton is a science fan and green news boffin who tweets, posts articles to Facebook, and blogs about ecology. He welcomes reader questions, tips, and incoherent rants: johnupton@gmail.com.

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Supreme Court hands a big win to Monsanto on GMO seeds

Supreme Court hands a big win to Monsanto on GMO seeds

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In a blow to opponents of GMOs and Monsanto, the Supreme Court today ruled unanimously that an Indiana soybean farmer violated the company’s patent by saving its trademark Roundup Ready seeds.

Every time a farmer buys seeds from Monsanto, she or he must sign a contract agreeing not to save seeds from the crop. Monsanto’s many vociferous critics condemn this practice for the way it traps farmers in a costly cycle of dependence on the company’s products. The farmer in this case, Vernon Bowman, signed such an agreement when he originally bought Monsanto’s Roundup Ready soybeans. But he found a clever way to get around the restrictions. Tom Laskawy explains:

For years, Bowman would grow a first crop of Monsanto seed, which he would purchase legally, and then would buy some commodity seed from his local grain elevator for his second crop. While aware he could not save seeds from the first crop he grew, Bowman would later plant the commodity seeds, spray the plants with Roundup, and was then able to identify which were resistant to the herbicide when they didn’t die. Bowman saved those seeds and saved money, since he had bought the commodity seeds for his second crop at a steep discount without paying Monsanto or signing its licensing agreement.

Farmers can sell saved seed to local grain elevators, which often resell the mixed seed packs for animal feed or industrial uses. In buying these so-called commodity seeds from the grain elevator, Bowman rightly assumed, as The Washington Post explains, that “those beans were mostly Roundup Ready — resistant to the weedkiller glyphosate — because that’s what most of his neighbors grow.” Bowman saved and replanted the Roundup Ready seeds from his second crop for eight years before Monsanto caught on and sued.

The New York Times reports:

Mr. Bowman’s main argument was that a doctrine called patent exhaustion allowed him to do what he liked with products he had obtained legally. But Justice Kagan said it did not apply to the way he had used the seeds.

“Under the patent exhaustion doctrine, Bowman could resell the patented soybeans he purchased from the grain elevator; so too he could consume the beans himself or feed them to his animals,” she wrote.

“But the exhaustion doctrine does not enable Bowman to make additional patented soybeans without Monsanto’s permission,” she continued, “and that is precisely what Bowman did.” …

Accepting that theory, she wrote, would create an “unprecedented exception” to the exhaustion doctrine. “If simple copying were a protected use,” she wrote, “a patent would plummet in value after the first sale of the item containing the invention.”

Sustainable-farming advocates and GMO critics intensely followed the case in the hopes that a ruling against Monsanto would finally put some limits on that company’s power in the agriculture industry. But the case was also “closely watched by researchers and businesses holding patents on DNA molecules, nanotechnologies and other self-replicating technologies,” the Associated Press reports.

Indeed, it seems the Supreme Court was more concerned about patent law than agricultural issues. The Washington Post reports:

While the case was about soybeans, the broader issue of patent protection is important to makers of vaccines, software and other products. Corporations were worried about what might happen if the decision had gone the other way.

But, as the justices had indicated at oral arguments in the case, they believed Bowman’s practices threaten the incentive for invention that is at the heart of patent law.

The court’s decision crushed the hopes of many in the anti-Monsanto camp. The Environmental Working Group’s General Counsel Thomas Cluderay said it “tightens the seed giant’s stranglehold on American agriculture” and “will no doubt pave the way for greater use and development of genetically engineered seed products and use of toxic pesticides, such as Roundup, on our farm fields.”

But sadly, the fact that the ruling was unanimous indicates that there probably never was much of a chance of it going the other way.

Claire Thompson is an editorial assistant at Grist.

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Fish DNA database aims to fight seafood fraud and promote conservation

Fish DNA database aims to fight seafood fraud and promote conservation

Matthew Kenrick

Over the past few years, the FDA has been compiling a fish DNA library to help combat seafood fraud. But despite its best efforts, many sushi eaters and other seafood diners are still chowing down on mislabeled and unsustainable fish species on the regular.

Now a Canadian team has gone a step further, compiling a DNA barcoding library of tens of thousands of Atlantic ocean fishes, and making much of it available directly to other research scientists and the public. You can thank Canadian biologist Paul Bentzen and his colleagues at Dalhousie University. Yes, despite the funny name, this is a real university. From Phys.org:

According to Paul Bentzen, Professor in the Department of Biology, “With growing pressures from fisheries, climate change and invasive species, it is more important than ever to monitor and understand biodiversity in the sea, and how it is changing. Our database provides a new tool for species identification that will help us monitor biodiversity. The availability of ever easier to use DNA sequencing technology can make almost anyone ‘expert’ at identifying species — and all it takes is a scrap of tissue.”

He continued, “There can be many steps in the supply chain between when the fish leaves the water and when it appears on a plate. With many desirable species becoming ever more scarce and expensive, there will always be temptation to substitute a cheaper fish (or an illegally harvested one) for a legal, more expensive one. We know it happens. DNA data never lie, unlike some seafood labels and restaurant menus. With the DNA database, it will be easier to detect seafood fraud when it happens.”

The database aims to fight fraud with readily available public information. The problem: It’s only searchable by wonky scientific names and jargon. That means it’s useful to other scientists, but not so useful to regular people. Until this kind of info gets funneled into an easily parse-able application, consumers and policy-makers will likely just feel like they’re drowning in data.

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Fish DNA database aims to fight seafood fraud and promote conservation

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Study finds ‘widespread seafood fraud’ at restaurants

Study finds ‘widespread seafood fraud’ at restaurants

Dead fish don’t lie — except for a lot of the ones served in restaurants.

Matthew Kenrick

A new study from conservation group Oceana found that 39 percent of New York restaurant fish DNA-tested by the group was mislabeled. That, combined with past studies of Los Angeles (55 percent), Boston (48 percent), and Miami (31 percent), paints a sad and even scary picture of what diners can expect when they sit down at American seafood restaurants.

Mislabeled fish was found at a range of eateries from low- to high-priced, and at every sushi spot tested. The New York Times reports:

In some cases, cheaper types of fish were substituted for expensive species. In others, fish that consumers have been urged to avoid because stocks are depleted, putting the species or a fishery at risk, was identified as a type of fish that is not threatened. Although such mislabeling violates laws protecting consumers, it is hard to detect.

Some of the findings present public health concerns. Thirteen types of fish, including tilapia and tilefish, were falsely identified as red snapper. Tilefish contains such high mercury levels that the federal Food and Drug Administration advises women who are pregnant or nursing and young children not to eat it.

Ninety-four percent of fish sold as white tuna was not tuna at all but in many cases a fish known as snake mackerel, or escolar, which contains a toxin that can cause severe diarrhea if more than a few ounces of meat are ingested.

“There are a lot of flummoxed people out there who are trying to buy fish carefully and trying to shop their conscience, but they can’t if this kind of fraud is happening,” said Kimberly Warner, a senior scientist at Oceana, who led the study.

Restaurateurs say they aren’t doing this on purpose, likening the accuracy of supply-chain information to a game of telephone, which should really boost your confidence.

Andrew Moesel, a spokesman for the New York State Restaurant Association, said that restaurants were victims, too, when it came to fish fraud. “Restaurants would be very concerned that a high percentage of fish are not what they had ordered,” he said. “Unless you’re very sophisticated, you may not be able to tell the difference between certain species of fish when you receive them.”

You might notice when you have toxic severe diarrhea, though, so that’s a helpful indicator!

One surprise of the study: Big-chain grocery stores were found to have the best fish accuracy, better than smaller markets. For now, though, I’d bet American consumers would rather trust retailers’ best judgments than fish their own dinners out of tanks like big-box shoppers do in China.

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Study finds ‘widespread seafood fraud’ at restaurants

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